WANG Huan, WANG Jiao, LI Zong-xiao etc. Interaction Dynamics Between Dacarbazine and DNA[J]. Chinese Journal of Luminescence, 2016,37(12): 1560-1565 DOI: 10.3788/fgxb20163712.1560.
The interaction between calf thymus DNA and anti-cancer drug dacarbazine was investigated using isothermal titration calorimetry(ITC)
spectroscopy
viscosity and other methods. The hyperchromic effect and blue shift in the absorption spectra as well as viscosity decline are observed clearly after the interaction between dacarbazine and DNA. Furthermore
the binding constant and number of binding sites are also recorded by ITC
presenting that the interactions of the dacarbazine with DNA can be categorized for two modes:a non-classical intercalation type and surface binding effect. In former
H
1
<
0
S
1
>
0
K
1
=5.6310
4
the binding site is 0.10. In latter
only surficial interaction during the combination of the drug molecule with DNA occurs
not embedding into the hydrophobic part of the DNA molecule
due to
H
2
>
0
S
2
>
0
K
2
=1.0010
3
and the binding site of 9.99. Meanwhile
UV method is also employed to find the binding constant of
K
a
=6.7010
4
which is consistence with ITC observation.
关键词
Keywords
references
DOYLE M L. Characterization of binding interactions by isothermal titration calorimetry[J]. Curr. Opin. Biotech., 1997, 8(1):31-35.
NGUYEN B, HAMELBERG D, BAILLY C, et al.. Characterization of a novel DNA minor-groove complex[J]. Biophys. J., 2004, 86(2):1028-1041.
陆从文,兰秀风,张林,等. 依巴斯汀与牛血清蛋白相互作用的荧光光谱研究[J]. 光子学报, 2015, 44(10):1030004-1-6. LU C W, LAN X F, ZHANG L, et al.. Interaction between ebastine and bovine serum albumin by fluorescence spectroscopy[J]. Acta Photon. Sinica, 2015, 44(10):1030004-1-6. (in Chinese)
LUCK A N, MASON A B. Structure and dynamics of drug carriers and their interaction with cellular receptors:focus on serum transferring[J]. Adv. Drug Deliv. Rev., 2013, 65(8):1012-1019.
司芳瑞,苗艳明,杨茂青,等. 基于MPA包覆的Mn掺杂ZnS量子点/米托蒽醌复合体系对DNA的检测[J]. 发光学报, 2016, 37(1):13-21. SI F R, MIAO Y M, YANG M Q, et al.. Detection of DNA based on manganese-doped ZnS quantum dots/MTX composite system[J]. Chin. J. Lumin., 2016, 37(1):13-21. (in Chinese)
WHITTAKER J, MCFADYEN W D, BAGULEY B C, et al.. The interaction of DNA-targeted platinum phenanthridinium complexes with DNA in human cells[J]. Anti-Cancer Drug Des., 2001, 16(2-3):81-89.
YARNELL A T, OH S, REINBERG D, et al.. Interaction of FACT, SSRP1, and the high mobility group (HMG) domain of SSRP1 with DNA damaged by the anticancer drug cisplatin[J]. J. Biol. Chem., 2001, 276(28):25736-25741.
ZHANG J, YU J, GU J, et al.. A novel protein-DNA interaction involved with the CpG dinucleotide at-30 upstream is linked to the DNA methylation mediated transcription silencing of the MAGE-A1 gene[J]. Cell Res., 2004, 14(4):283-294.
刘振佳,司伊康,陈晓光. 圆二色谱测定技术在小分子化合物与DNA相互作用研究中的应用[J]. 药学学报, 2010, 45(12):1478-1484. LIU Z J, SI Y K, CHEN X G. Application of circular dichroism to the study of interactions between small molecular compounds and DNA[J]. Acta Pharm. Sinica., 2010, 45(12):1478-1484. (in Chinese)
龙泉鑫,何颖,谢建平. 喹诺酮类药物作用的生理和遗传的分子机制[J]. 药学学报, 2012, 47(8):969-977. LONG Q X, HE Y, XIE J P. The molecular physiological and genetic mechanisms underlying the superb efficacy of quinolones[J]. Acta Pharm. Sinica, 2012, 47(8):969-977. (in Chinese)
钟文英,黄琦,王丹丹,等. 巴罗沙星与DNA的相互作用及Mg2+的影响[J]. 药学学报, 2005, 40(7):663-667. ZHONG W Y, HUANG Q, WANG D D, et al.. Interaction between balofloxacin and DNA and the influence of Mg2+ on the interaction[J]. Acta Pharm. Sinica, 2005, 40(7):663-667. (in Chinese)
ROSU F, GABELICA V, DE PAUW E, et al.. UV spectroscopy of DNA duplex and quadruplex structures in the gas phase[J]. J. Phys. Chem. A, 2012, 116(22):5383-5391.
ZHANG G W, HU X, FU P. Spectroscopic studies on the interaction between carbaryl and calf thymus DNA with the use of ethidium bromide as a fluorescence probe[J]. J. Photochem. Photobiol. B, 2012, 108:53-61.
PYLE A M, REHMANN J P, MESHOYRER R, et al.. Mixed-ligand complexes of ruthenium (Ⅱ):factors governing binding to DNA[J]. J. Am. Chem. Soc., 1989, 111(8):3051-3058.
SUN Y T, ZHANG H Q, BI S Y, et al.. Studies on the arctiin and its interaction with DNA by spectral methods[J]. J. Lumin., 2011, 131(11):2299-2306.
BI S Y, SONG D Q, KAN Y H, et al.. Spectroscopic characterization of effective components anthraquinones in Chinese medicinal herbs binding with serum albumins[J]. Spectrochim. Acta Part A:Mol. Biomol. Spectrosc., 2005, 62(1-3):203-212.
GAO E J, LIU L, ZHU M C, et al.. Synthesis, characterization, interaction with DNA, and cytotoxic effect in vitro of new mono-and dinuclear Pd(Ⅱ) and Pt(Ⅱ) complexes with Benzo[d]thiazol-2-amine as the primary ligand[J]. Inorg. Chem., 2011, 50(11):4732-4741.
FOTTICCHIA I, FOTTICCHIA T, MATTIA C A, et al.. Thermodynamic signature of secondary nano-emulsion formation by isothermal titration calorimetry[J]. Langmuir, 2014, 30(48):14427-14433.
GRNER S, NEEB M, BARANDUN L J, et al.. Impact of protein and ligand impurities on ITC-derived protein-ligand thermodynamics[J]. Biochim. Biophys. Acta:Gen. Subjects, 2014, 1840(9):2843-2850.
JELESAROV I, BOSSHARD H R. Isothermal titration calorimetry and differential scanning calorimetry as complementary tools to investigate the energetics of biomolecular recognition[J]. J. Mol. Recognit., 1999, 12(1):3-18.
DRAGAN A I, LI Z L, MAKEYEVA E N, et al.. Forces driving the binding of homeodomains to DNA[J]. Biochemistry, 2006, 45(1):141-151.
Interaction of Pioglitazone Hydrochloride to Pepsin and Its Effect on Drug Efficiency and Digestive Ability of Stomach
Study of Interaction Between Cefetamet Pivoxil and Pepsin by Spectroscopic and Molecular Docking
Mechanism of Interaction Between Ceftazidime and Trypsin by Spectroscopic and Molecular Docking Methods
InP@ZnS QDs/Dured Fluorescent Nanoprobe for The Detection of DNA
Spectral Properties of The Interaction Between Transferrin and Cefotaxime Sodium
Related Author
CHENG Xu
ZHANG Hong-cai
MA Li-hua
BIAN Gang
LIU Bao-sheng
WANG Chun-dan
LI Zhi-yun
CHEN Li
Related Institution
Key Laboratory of Analytical Science and Technology of Hebei Province, National Chemistry Experimental Teaching Demonstration Center Hebei University, Key Laboratory of Pharmaceutical Chemistry and Molecular Diagnosis Ministry of Education